PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60577.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 400aa    MW: 41719.1 Da    PI: 8.7505
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60577.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.75.1e-39532312136
           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas...nsssg...... 88 
                   ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s   +          
  MLOC_60577.3  53 PPKRTTSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSmlsT---Ipahlra 146
                   789******************************************************************999766677777663330...2566777 PP

           TCP  89 ..................................kaaksaakskksqksaasalnlakesrakarar..are.rtrekmriknkl 136
                                                        +s+ +   s +s +  l+++ +s+a a ++  +r+ r++++m++++++
  MLOC_60577.3 147 aglpgsrfgggpradawdrfvglgfggglespasTTTSSSSPLLLSFHSGSVGLDVSPSSSAAAASTelSRKrRWEQEMQQQQQQ 231
                   7888888889999999999999999999999986333333356666666666688888777666666555665666666666544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-4357232IPR005333Transcription factor, TCP
PROSITE profilePS5136927.59859113IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDVTGDAGGG RRPNFPLQLL EKKEEHPCSI SPAAGLGTNG SATGELQVRK AAPPKRTTSK  60
DRHTKVDGRG RRIRMPAICA ARVFQLTREL GHKTDGETIE WLLQQAEPAV IAATGTGTIP  120
ANFTSLNISL RSSGSMLSTI PAHLRAAGLP GSRFGGGPRA DAWDRFVGLG FGGGLESPAS  180
TTTSSSSPLL LSFHSGSVGL DVSPSSSAAA ASTELSRKRR WEQEMQQQQQ QHHQHQQQQQ  240
QQYQQQMAGY TQSQMPGTVW MVPTSNTQGA VAAPAGGGES IWTFPQPGSG GGGSATVYRG  300
VPSGLHFMNI PAPMAVHAQQ LGLGQAGGGG SAAASEGHMG ILAALNAYRG QHASASEVTV  360
AGHNGTAEGT THHQHQNQHQ HQHLQHGGGE PNESMSGSDS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60577.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696150.0AK369615.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094G23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168709.10.0transcription factor TCP15-like
TrEMBLF2E0E40.0F2E0E4_HORVV; Predicted protein
STRINGMLOC_60577.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-50TCP family protein