PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60455.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 238aa    MW: 25917.3 Da    PI: 8.0682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60455.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-1073120454
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   ++  rE+ RRdr+N++f+eL  +l +    + +K +K++iL  A++ + +L
  MLOC_60455.2  73 TKACREKLRRDRLNERFNELCAVLEPG---KPPKADKVAILSDATRLLDQL 120
                   6789**********************9...99**************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1262135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.07469120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-673125No hitNo description
PfamPF000102.4E-773120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-775126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1176142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSCGGGQSGW LLDYGLVEEE IQASDFIYMV DDPPVSSAML GFDAPRKEDA AAARDNSGAK  60
KRSRPESSAQ PGTKACREKL RRDRLNERFN ELCAVLEPGK PPKADKVAIL SDATRLLDQL  120
RAEAQQLKSS NESLQDSIKS LKSEKSELRD EKTKLKAERE RLEQMLKGVS AAAAPRQFIP  180
HPAAAAAPQF HPAAAFAHAG KFVPAYAAGY PPPAAFWQWI PPTSLDTSKD PAHWPPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721680.0AK372168.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147J14.
GenBankAK3558050.0AK355805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1026E13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568328.11e-147PREDICTED: transcription factor ILR3
SwissprotQ9FH379e-57ILR3_ARATH; Transcription factor ILR3
TrEMBLF2CW021e-173F2CW02_HORVD; Predicted protein
STRINGMLOC_60455.11e-173(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-43bHLH family protein