PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59511.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 251aa    MW: 27631.5 Da    PI: 6.9165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59511.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-0891138454
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   ++  rE+ RRd++N++f eL  +l +    + +K +K +iL  A++ + +L
  MLOC_59511.1  91 SKACREKVRRDKLNERFLELGAVLDPG---KTPKIDKCAILNDAIRAVTEL 138
                   6789**********************9...9**************977665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.94187138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-690143No hitNo description
Gene3DG3DSA:4.10.280.103.6E-1391161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-691138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-1391163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-793144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00795153185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MASPEGSNWV FDCPLMDDLA AADFAAVPAG GFYWNPPMPP QMHTLAQAVS ATPAPNPCAE  60
INSSVSVDWD HAKGQPKNKR PRSETGAQPS SKACREKVRR DKLNERFLEL GAVLDPGKTP  120
KIDKCAILND AIRAVTELRS EAEKLKDSNE SLQEKIRELK AEKNELRDEK QKLKAEKESL  180
EQQIKFMNAR QRLVPHPSVI PATAFAAAQG QAAGHKLMMP VMSYPGFPMW QFMPPSDVDT  240
SDDPKSCPPV A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3700160.0AK370016.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2103J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562971.11e-155PREDICTED: transcription factor ILR3
SwissprotQ9FH377e-77ILR3_ARATH; Transcription factor ILR3
TrEMBLF2E1J50.0F2E1J5_HORVD; Predicted protein
STRINGMLOC_59511.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.17e-67bHLH family protein