PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59305.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 227aa    MW: 24160.3 Da    PI: 9.7465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59305.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19655154
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                  ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  + 
  MLOC_59305.1  6 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAILMS 55
                  59*******9.**********8.....334*********************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.30E-32665No hitNo description
SMARTSM003808.1E-40770IPR001471AP2/ERF domain
PROSITE profilePS5103221.957764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-33764IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-20765IPR016177DNA-binding domain
PfamPF008473.1E-12754IPR001471AP2/ERF domain
PRINTSPR003671.4E-10819IPR001471AP2/ERF domain
PRINTSPR003671.4E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVQSKKKFRG VRQRHWGSWV SEIRHPLLKR RVWLGTFETA EEAARAYDEA AILMSGRNAK  60
TNFPVPRSAN GEIIVAPAAA ARDIRGGVGS SSSGAAGASS LSQILSAKLR KCCKTPSPSL  120
TCLRLDTEKS HIGVWQKRAG ARADSSWVMT VELNKEPAAA APPTPSDSTV SATPSSSTST  180
STTGSPPEAM EDEERIALQM IEELLSRSSP ASPSHGLLHG EEGSLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-15665161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3748790.0AK374879.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3079A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563662.11e-114PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI332e-80WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLB1H0T41e-163B1H0T4_HORVD; Predicted protein
STRINGMLOC_59305.11e-163(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37173876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-60ERF family protein