PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58641.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 295aa    MW: 32511.1 Da    PI: 4.3923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58641.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19123172255
           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   +++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ kl+g
  MLOC_58641.2 123 RFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIKLRG 172
                   69*******.**********88.....55*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-12123172IPR001471AP2/ERF domain
PROSITE profilePS5103223.393123180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-29123182IPR001471AP2/ERF domain
SMARTSM003801.7E-35123186IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-21123181IPR016177DNA-binding domain
PRINTSPR003673.4E-10124135IPR001471AP2/ERF domain
CDDcd000184.19E-25131182No hitNo description
PRINTSPR003673.4E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MWPMEEEFFM AVKRTEHVEV TSRSLAASAT GMEGFGGGVE QPKMVRVFCD DFDATDSSSD  60
EEDGERRRVK RYVQEIRLQP AVQVKVEESA PVAKAASATA TATRPRVMVP VRKRKAEAGG  120
ERRFRGVRRR PWGKYAAEIR DPWRRVRVWL GTFDTAEEAA KVYDSAAIKL RGPDATVNFQ  180
QSEDGEDGDT AKKPSSSSST AETDESSGVF GCSFSGDDFA GELAPLYSDF DLLSDFAEPP  240
MDFLSNLPEP AFAFTSDCSS SAFQPCPPSP AALQQADEFF QDITDLFQID PLPVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-18122179462ATERF1
3gcc_A6e-18122179462ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113130RKAEAGGERRFRGVRRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690080.0AK369008.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083K22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565510.11e-116PREDICTED: pathogenesis-related genes transcriptional activator PTI6
SwissprotQ9SUE31e-41CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLM0XBR50.0M0XBR5_HORVD; Uncharacterized protein
STRINGMLOC_58641.11e-178(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-30cytokinin response factor 4