PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58414.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 141aa    MW: 15767.1 Da    PI: 10.0813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58414.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.44.6e-0776102430
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
           HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                   +h+ +Er RR++i +++  L++l+P +
  MLOC_58414.5  76 SHSLAERARREKITERMKILQDLVPGC 102
                   8************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.61E-570104No hitNo description
SuperFamilySSF474591.44E-870112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.3472138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-975115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-476102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
AVSVICSCAR FGVVVVLTDA EAKRFKANKS SDDNGSFRKD AEADSRNASK AVDQNPPPPK  60
QDFIHVRARR GQATDSHSLA ERARREKITE RMKILQDLVP GCNKVHFNLI NKLSIFFMFP  120
FCPTNGHIHL PLYHLQALSP P
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58414.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692631e-144AK369263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2087O19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152106.15e-57transcription factor bHLH79-like
SwissprotQ84T084e-43BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A287SNC96e-88A0A287SNC9_HORVV; Uncharacterized protein
STRINGMLOC_58414.46e-70(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.19e-28BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]