PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58414.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 197aa    MW: 21750.5 Da    PI: 8.0959
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58414.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.1e-1076123455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++ L+
  MLOC_58414.4  76 SHSLAERARREKITERMKILQDLVPGC----NKVIGKASVLDEIINYVQALE 123
                   8*************************9....677**************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-1770139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-970127No hitNo description
PROSITE profilePS5088815.66372122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-1872143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-776123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-978128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
AVSVICSCAR FGVVVVLTDA EAKRFKANKS SDDNGSFRKD AEADSRNASK AVDQNPPPPK  60
QDFIHVRARR GQATDSHSLA ERARREKITE RMKILQDLVP GCNKVIGKAS VLDEIINYVQ  120
ALERQIEFLS MKLEAVNAHA HAHNGVETFP TKDFAAPTYN TAPGLTFDPQ TPREYAQGSP  180
ASEWLHMQIG GTYERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58414.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692631e-157AK369263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2087O19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152106.11e-133transcription factor bHLH79-like
SwissprotQ84T081e-106BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A287SNB21e-133A0A287SNB2_HORVV; Uncharacterized protein
STRINGMLOC_58414.41e-146(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-63BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]