PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58414.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 184aa    MW: 20490.9 Da    PI: 7.7657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58414.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.1e-1063110455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++ L+
  MLOC_58414.3  63 SHSLAERARREKITERMKILQDLVPGC----NKVIGKASVLDEIINYVQALE 110
                   8*************************9....677**************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.65E-957114No hitNo description
SuperFamilySSF474595.89E-1757126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-1859130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.66359109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-763110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-965115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTVLTDAEAK RFKANKSSDD NGSFRKDAEA DSRNASKAVD QNPPPPKQDF IHVRARRGQA  60
TDSHSLAERA RREKITERMK ILQDLVPGCN KVIGKASVLD EIINYVQALE RQIEFLSMKL  120
EAVNAHAHAH NGVETFPTKD FAAPTYNTAP GLTFDPQTPR EYAQGSPASE WLHMQIGGTY  180
ERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58414.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692631e-157AK369263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2087O19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152106.11e-133transcription factor bHLH79-like
SwissprotQ84T081e-106BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A287SNB21e-133A0A287SNB2_HORVV; Uncharacterized protein
STRINGMLOC_58414.41e-135(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.15e-64BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]