PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58276.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 374aa    MW: 41346.5 Da    PI: 4.5975
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58276.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-16129178255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +++G r+++ +g+W+AeIrdps+     r +lg+f +aeeAa+a++ a+++++g
  MLOC_58276.1 129 QFRGTRQRP-WGKWAAEIRDPSK---GVRLWLGTFRSAEEAARAYDVAARRIHG 178
                   58999****.**********965...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.40E-32129187No hitNo description
SuperFamilySSF541713.2E-21129187IPR016177DNA-binding domain
SMARTSM003804.6E-36129192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-30129187IPR001471AP2/ERF domain
PROSITE profilePS5103223.459129186IPR001471AP2/ERF domain
PfamPF008473.2E-9130178IPR001471AP2/ERF domain
PRINTSPR003671.4E-9130141IPR001471AP2/ERF domain
PRINTSPR003671.4E-9152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MCGPLTHKNV DVPPVTRKVM AATFWPEKKK PRQTDGRGRH FLGLGGLRGL GLDEKEEDFE  60
ADFKEFEVNF GDSDLELGHN GVIGKDDHED VVEIKPFVVI KGFLSQDDLS TMSTAGPSER  120
PAKRKRKNQF RGTRQRPWGK WAAEIRDPSK GVRLWLGTFR SAEEAARAYD VAARRIHGKK  180
AKVNFPEEPA VEEPTVIPAL NNLANPNAFV YPSVDFASNQ PLVQIANMPF VPAMNFVAPV  240
QAPAMNMYSD QGSNTFGCSD LGRQYTIKTP DMSSIIAPVS TIAEGAESAR VQSNTYNPVV  300
IAEAAESALV QSNTYNSVVP SIMESDSVDF DAWTRFLMDD DVDEPIDSLV NFDVLQDVLG  360
NMDLWNFDDM PICG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-18128186160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-18128186463ATERF1
3gcc_A1e-18128186463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454666.11e-116hypothetical protein SORBIDRAFT_04g035160
SwissprotQ6K7E61e-106ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLM0XA370.0M0XA37_HORVD; Uncharacterized protein
STRINGMLOC_58276.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.33e-29related to AP2 2