PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57631.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 216aa    MW: 23113.5 Da    PI: 7.1245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57631.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11249454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  +h ++Er+RR+++N+ +  Lr l P     + k+ + a+i   A+e+I++L
  MLOC_57631.1  2 SHIAVERNRRRQMNEHLKVLRALTPAF---YIKRCDQASIIGGAIEFIREL 49
                  89************************9...9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-15177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-11153No hitNo description
PROSITE profilePS5088814.621149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-9455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKV LRALTPAFYI KRCDQASIIG GAIEFIRELH TVLDALEAKK  60
KRRLCSPTPS PRSLLTCSTP TSAGGSASDV SPNSNGSSGS CVVVAPGVGG AAVKELAACC  120
NSPAADVEAR ISGANVLLRT LSGRVPGQAA TIVALLESLH LEVLHVNIST MDDTVLHSFV  180
LKIGLECQLS VEEVAFEVQQ TFCYHQQELD YSSMAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15862KKKRR
25863KKKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698225e-44EU969822.1 Zea mays clone 336092 DNA binding protein mRNA, complete cds.
GenBankKJ7269695e-44KJ726969.1 Zea mays clone pUT3670 bHLH transcription factor (bHLH82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968634.11e-94PREDICTED: transcription factor MUTE
SwissprotQ9M8K61e-70MUTE_ARATH; Transcription factor MUTE
TrEMBLM0X7G91e-158M0X7G9_HORVD; Uncharacterized protein
STRINGMLOC_57631.21e-128(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.11e-62bHLH family protein