PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57269.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 198aa    MW: 21514.8 Da    PI: 6.0877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57269.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32.1e-0611521055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  + RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  MLOC_57269.3 11 QVRRERISERMRYLQELVPGC----DKVTGKAGMLDEIINYVQSLQ 52
                  67******************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.318151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-4757IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-131168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.99E-71356No hitNo description
Gene3DG3DSA:4.10.280.106.0E-131465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MHSLILVRMV QVRRERISER MRYLQELVPG CDKVTGKAGM LDEIINYVQS LQKQVEFLSM  60
KIAAANPVVN FNIVDDLFGG RRMSQPCGPA AALPAMTLPM HHGQLDPSCL QMSNTAMQQM  120
QQPAAGFGLD MVLNHPYPLR SAAATPASAS AATSVESCLD VNGAAAWDIA SQNLFSGFDA  180
QFQSVQSGCL LDNLKMEL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3606200.0AK360620.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122A07.
GenBankAK3602380.0AK360238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1113K05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570191.12e-94PREDICTED: transcription factor bHLH63
SwissprotQ8GY617e-31BH063_ARATH; Transcription factor bHLH63
TrEMBLM0X5U61e-146M0X5U6_HORVD; Uncharacterized protein
STRINGMLOC_57269.21e-135(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-31cryptochrome-interacting basic-helix-loop-helix 1