PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57076.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 202aa    MW: 21800.1 Da    PI: 10.7893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57076.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.72.6e-05921301255
                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  MLOC_57076.4  92 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 130
                   7788999*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.03980129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1190142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-590134No hitNo description
Gene3DG3DSA:4.10.280.102.6E-994137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MRTRLANCVC LLSGRILWYD VRVLQMGVPA ALVSGNGSAL QAAAGRSSGG GGLHDEGGGQ  60
QLQVVVSSKK KPRLLHSRPA TNNNILPSFK VRKEKLGDRI AALQQLVSPF GKTDTASVLM  120
EAIGYIKFLQ DQVETLSGPY MRSAKHKKAR TTQQRGPSNT GNQKEEAKVD LRSRGLCLVP  180
LACTSYVTNE NGVWAPPNFR GN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-69HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755313.12e-81PREDICTED: transcription factor bHLH110-like isoform X2
SwissprotQ9SFZ36e-42BH110_ARATH; Transcription factor bHLH110
TrEMBLM0X4Y91e-149M0X4Y9_HORVD; Uncharacterized protein
STRINGMLOC_57076.21e-130(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.17e-43bHLH family protein