PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57076.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 200aa    MW: 21571.8 Da    PI: 10.8952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57076.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.6e-05921301255
                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  MLOC_57076.3  92 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 130
                   7788999*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.03980129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.02E-590132No hitNo description
SuperFamilySSF474598.11E-1090133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-794132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRTRLANCVC LLSGRILWYD VRVLQMGVPA ALVSGNGSAL QAAAGRSSGG GGLHDEGGGQ  60
QLQVVVSSKK KPRLLHSRPA TNNNILPSFK VRKEKLGDRI AALQQLVSPF GKTDTASVLM  120
EAIGYIKFLQ DQTLSGPYMR SAKHKKARTT QQRGPSNTGN QKEEAKVDLR SRGLCLVPLA  180
CTSYVTNENG VWAPPNFRGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57076.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-69HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153231.11e-108uncharacterized protein LOC109738546
SwissprotQ9SFZ31e-37BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A287K6151e-125A0A287K615_HORVV; Uncharacterized protein
STRINGMLOC_57076.21e-126(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.19e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]