PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56874.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 643aa    MW: 71644.8 Da    PI: 4.8816
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56874.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.2e-09525572347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E ++lvd+v+q+G+g W+ I r        Rt  ++k++w+++
     MLOC_56874.1 525 AWTLSEVLKLVDGVAQFGPGKWSEIRRLSFasySYRTSVDLKDKWRNL 572
                      7**************************99999*99***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.855518577IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-12519576IPR009057Homeodomain-like
SuperFamilySSF466891.79E-14520579IPR009057Homeodomain-like
SMARTSM007179.3E-9522575IPR001005SANT/Myb domain
CDDcd116601.66E-17524574No hitNo description
PfamPF002496.8E-6525572IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MEVDTLQDAQ ETKNGENDFE ENVSSDPVVY QLVRVEGDGT LVPPTEDEVL QIEQFLDDKV  60
DLPSIDDVGN VEDFFTNDCM LLKEPDFEDG YSELETNGEI HTHQFDADLE VDRLKPSDDS  120
LDLPSECTVV HDHEPDKLNT EQEANNIVHQ DNASTETPKS TVLNDSCSAE KEKADACSRS  180
VNNSSTGPSV SGVTSSVPDF SILRGEVCLD DLTIRELQEA FRATFGRETT VKDKLWLKRR  240
ITMGLTNSCD VQSSGCVVKD YKMVCKDAKH ELPTVEGIPK VEVEATSLIR YQVLGPGNEK  300
DTPSCSYYRS EDQQRSSNRL KGVSTDNDEP EGTLLDEQGA AKRLRKPTKR YIEELSDTET  360
LDSTGKLSSP GKRAAHGEVL LRQRVTPLQE VDSLRITYPT RKDTFGGFSV HVPYASRMRR  420
GRPRRNFISF LDDDPPVECP EVQMAVETTL GKDGEHVNHV NSAVEVPLMK NAEKKGAHIE  480
TTEKKGEHIE MADNKETHSI EADDICRTDA KTKTKRSLKR KHHRAWTLSE VLKLVDGVAQ  540
FGPGKWSEIR RLSFASYSYR TSVDLKDKWR NLIRASQTQL SPENDGVCPR KSNPSIIPIP  600
PSILLRVKEL VELQPQAGNL AAAIKFSGQS SKVAHGRGSS GFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519310.0JF951931.1 Triticum aestivum clone TaMYB48 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570524.10.0PREDICTED: uncharacterized protein LOC100846611 isoform X2
TrEMBLM0X4390.0M0X439_HORVD; Uncharacterized protein
STRINGMLOC_56874.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-78TRF-like 6