PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56814.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 520aa    MW: 54465.9 Da    PI: 4.6858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56814.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11340382754
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+++N+++  Lr+++P  +      K++ a+iL  AveY+++L
  MLOC_56814.2 340 MAERRRRKKLNDRLYMLRSVVPRiS------KMDRASILGDAVEYLQEL 382
                   79*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.485333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16336403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-14339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-9339382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-13340386No hitNo description
Gene3DG3DSA:4.10.280.102.2E-16340395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.47E-5453490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MLPQFNTSLS WVQEGGDGHE HQGLGHDQAA AMGMLPMMGQ EAGNQRLLPM PSGEGGGFGA  60
PPMLPEHGWY FDDQGALGGA AGNGSMVPSP ATMEATGSSS GFGAGSQMFP LLNPGVAGTG  120
PLDVSEFDLD IPGVGGGDLS AFLGAGNASN ASLLPHGDSE FLGSFRGFGT APAQRTDFGG  180
LAGYDLFGTG ARGWSGPSLE VPAAPASLTA PFSGQGNAAV LRPLENLPAS GAQPTLYQKR  240
ALRRNAGEED GERKRKAPAV ASASAFSVER AGMMILDDAD DDTISLDASG LNYDSEDGRD  300
VEESGRKDGK ESNVNSTVTG GAAAEGNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV  360
PRISKMDRAS ILGDAVEYLQ ELKQKINDLQ NELDSSPSTS SLPPTPTSFN PLTPTMPALP  420
SRVKEELTSP TAQQPCVEVG LREGRAVNIH MLCPRRPGLV HSAMKALEDL GLDVQQAVIS  480
YFNDFTLDVF KAECKDDGPG PQPEEIKAVL LQSAGFQPAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329347KKKGMPAKNLMAERRRRKK
2341348ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449578.11e-153hypothetical protein SORBIDRAFT_05g019530
RefseqXP_014757473.11e-153PREDICTED: transcription factor SCREAM2-like isoform X2
SwissprotQ9LSE21e-92ICE1_ARATH; Transcription factor ICE1
TrEMBLM0X3X50.0M0X3X5_HORVD; Uncharacterized protein
STRINGMLOC_56814.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.43e-72bHLH family protein