PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5655.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 213aa    MW: 23011.9 Da    PI: 5.1235
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5655.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.6e-1169128258
                  XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
       bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele...elkkevak 58 
                   el++ r+   NReA r++Rq+Kka  + Lee+vk+L a N++L  +l+    l+ eva+
  MLOC_5655.1  69 DELRNPRKPLGNREAVRKYRQKKKAHAAFLEEEVKKLRAANQQLLRRLQghaALEAEVAR 128
                  57889999999**********************************999722235555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-1566136No hitNo description
SMARTSM003381.1E-1068135IPR004827Basic-leucine zipper domain
PfamPF077167.2E-1270125IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.6870117IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.11E-872118No hitNo description
CDDcd146867.27E-1375127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDDGLYLPIP SHLLFPYPEI SHGFDEFLAC THTHSCPSWS SPAAAHTHTC LHAHTQVVAS  60
GEDYAVEQDE LRNPRKPLGN REAVRKYRQK KKAHAAFLEE EVKKLRAANQ QLLRRLQGHA  120
ALEAEVARLT SLLLDVRGKI DEAEIGALPF DERCSFGSVV CTAAELTPCF DASGAEVAAV  180
REAGDVDDGG IVSGELGVPE VVDAVASFVN SVA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5655.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3548460.0AK354846.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1012A02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199352.11e-135basic leucine zipper 23-like
RefseqXP_020199354.11e-135basic leucine zipper 23-like
SwissprotQ8GTS23e-42BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A223PYQ51e-154A0A223PYQ5_HORVU; BZIP transcription factor 55
TrEMBLM0X2P61e-154M0X2P6_HORVV; Uncharacterized protein
STRINGMLOC_5655.11e-155(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38313675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.13e-25bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]