PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55239.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family LBD
Protein Properties Length: 143aa    MW: 14663.8 Da    PI: 8.7796
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55239.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601223.3e-3835123188
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                   +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq++
  MLOC_55239.2  35 PCGACKFLRRKCVSECIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVH 123
                   7***********************9989***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.92134136IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-3835123IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MSSGVGSSTL GGCGGPSGSG SGGGGGGLGG GGGGPCGACK FLRRKCVSEC IFAPYFDSEQ  60
GAAHFAAVHK VFGASNVSKL LLQIPAHKRL DAVVTICYEA QARLRDPVYG CVAHIFALQQ  120
QVHPSHPSII CPSIHRVKFN LHM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0940771e-132FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400358.13e-57PREDICTED: LOB domain-containing protein 18-like
SwissprotQ9SLB71e-53LBD16_ARATH; LOB domain-containing protein 16
TrEMBLM0WWH84e-99M0WWH8_HORVD; Uncharacterized protein
STRINGMLOC_55239.11e-81(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-51LOB domain-containing protein 18