PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54157.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 210aa    MW: 22860.6 Da    PI: 6.3327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54157.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.8e-1062102954
                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    r RR+ri ++f  Lr+l+P        K++ +++Le+A++Y+k L
  MLOC_54157.1  62 ARERRHRISDRFRVLRSLVPGG-----SKMDNVSMLEQAIHYVKFL 102
                   699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.06653102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1458117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.01E-1459107No hitNo description
SMARTSM003539.2E-1359108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-1359112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-762102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDPYHYENIH DPHGCSFPVH PQPPFLLHHY PAAALAESRV RGGAGRRRSG AKLSTDPQSV  60
AARERRHRIS DRFRVLRSLV PGGSKMDNVS MLEQAIHYVK FLKAQVSLHQ AMLMQHEEGC  120
GGGHGEFDGA PGEVTPMELP AAQALQEVMS CYYAEAHQVE ELDLCAGQMS SSSHDLPPLP  180
SCVFDEESAA ACYSGCSLQA GEIAHAHGSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562380.0AC256238.1 Hordeum vulgare clone HV_Mba017-J04, complete sequence.
GenBankAK3734110.0AK373411.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3030D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567247.16e-77PREDICTED: transcription factor LAX PANICLE-like
SwissprotQ7XAQ61e-56LAX_ORYSJ; Transcription factor LAX PANICLE
TrEMBLF2EB861e-153F2EB86_HORVD; Predicted protein
STRINGMLOC_54157.11e-153(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.11e-27APRATAXIN-like