PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53628.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 87aa    MW: 9890.04 Da    PI: 5.847
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53628.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-071661345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W++ E + + +a + +G g    W+++a+ mg +++ +++  ++q
     MLOC_53628.3 16 EWSKKENKMFEEALAYYGEGapnLWEKVANAMGGTKSVEEVCRHFQ 61
                     6********************************99*****999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.063964IPR017877Myb-like domain
SMARTSM007172.6E-41366IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-51468IPR009057Homeodomain-like
SuperFamilySSF466891.95E-111571IPR009057Homeodomain-like
PfamPF002492.2E-61661IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSGSPRSSS PSSYSEWSKK ENKMFEEALA YYGEGAPNLW EKVANAMGGT KSVEEVCRHF  60
QILVDDVQNI EYGRIPFPKY KTQGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-20884277RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612033e-86AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961187.18e-34PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1734e-25RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM0WPY24e-60M0WPY2_HORVD; Uncharacterized protein
TrEMBLM0WPY33e-60M0WPY3_HORVD; Uncharacterized protein
STRINGMLOC_53628.11e-59(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-22RAD-like 6