PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52982.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 63aa    MW: 7336.33 Da    PI: 11.9703
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52982.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.5e-094401147
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     l++d+  ++G g+W+ I+r     Rt+ q+ s+ qky
     MLOC_52982.1  4 LFLDGLDKYGRGDWRNISRFAVRSRTPTQVASHAQKY 40
                     8***********************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.589145IPR017930Myb domain
SuperFamilySSF466899.79E-12246IPR009057Homeodomain-like
CDDcd001671.04E-6341No hitNo description
TIGRFAMsTIGR015573.9E-12344IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.7E-6340IPR009057Homeodomain-like
PfamPF002492.8E-6440IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MRRLFLDGLD KYGRGDWRNI SRFAVRSRTP TQVASHAQKY FIRQASAATR DSKRKSIHDI  60
TTP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3673736e-96AK367373.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2055O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567296.13e-35PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-23DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM0WMN45e-40M0WMN4_HORVD; Uncharacterized protein
STRINGMLOC_52982.22e-37(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.11e-24MYB_related family protein