PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52276.7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family LBD
Protein Properties Length: 225aa    MW: 24946.1 Da    PI: 4.9091
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52276.7genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.45e-3829127198
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                   +C aCk+lrrkC+++Cv+ap+f++eq +++fa++hk+FGasn +kll +lp ++r++a+ ++ yeA+ar++dPvyG+v++i++lqqq+ +l+a+l++
  MLOC_52276.7  29 PCGACKFLRRKCVSGCVFAPHFCHEQgAAHFAAIHKVFGASNASKLLMSLPATDRREAAVTISYEAQARLHDPVYGCVAHIFALQQQVVTLQAQLES 125
                   7*************************89*******************************************************************98 PP

        DUF260  97 lk 98 
                   lk
  MLOC_52276.7 126 LK 127
                   76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.11928130IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3629127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MIQFTGCKEQ EYTTNIDQAP EAMTGFSSPC GACKFLRRKC VSGCVFAPHF CHEQGAAHFA  60
AIHKVFGASN ASKLLMSLPA TDRREAAVTI SYEAQARLHD PVYGCVAHIF ALQQQVVTLQ  120
AQLESLKTGA PQLVSSLEED SIKAKIMAYE KGEARMPQLG ESVKIESESY FGDDVMACTS  180
MPYSQGYSSH IYTTDYTDSF NDDSINRSTM FPVDMQEYLQ ENGYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659712.13e-70PREDICTED: LOB domain-containing protein 17-like
SwissprotQ9SLB61e-60LBD17_ARATH; LOB domain-containing protein 17
TrEMBLM0WK431e-170M0WK43_HORVD; Uncharacterized protein
STRINGMLOC_52276.71e-170(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.18e-53LBD family protein