PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51361.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 181aa    MW: 19724.9 Da    PI: 5.9472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51361.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.51.5e-0525413955
                  TCHHHHHHHHHHHHHHH CS
           HLH 39 sKaeiLekAveYIksLq 55
                  +Ka+iL +A+eY+ksLq
  MLOC_51361.2 25 DKASILDEAIEYLKSLQ 41
                  8***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-72349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-62466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.47E-52545No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVTSLTYNLP MFLCFPIFAL YFQADKASIL DEAIEYLKSL QMQVQVMWMT SGMAPMMFPG  60
SHQFMPPMAV GMNSACLPAA QGLNQMARVP YMNHTLSNHI PMNPSPAMNP MYVANQMQNI  120
QLREASNHFL HPDGGLATAP QVAGPYAYTP QVAPKNQIPE VPDCTVVPTS GPGQPPAPDG  180
I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3642470.0AK364247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023A20.
GenBankAK3585510.0AK358551.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1078I07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228906.14e-86PREDICTED: transcription factor PIF5-like
TrEMBLM0WGY01e-130M0WGY0_HORVD; Uncharacterized protein
STRINGMLOC_51361.11e-130(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.15e-14phytochrome interacting factor 3-like 6