PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_46407.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 243aa    MW: 26077.9 Da    PI: 6.7667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_46407.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-125597754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  MLOC_46407.1 55 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 97
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8664897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-1751113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1454103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-95497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-1355102No hitNo description
Gene3DG3DSA:4.10.280.103.7E-1655111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.66E-5168233No hitNo description
CDDcd048734.24E-7172243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGWDDEDELD QQSMDASSLG VSASLENAAV GAPGGGGGGG NGKGKKKGMP AKNLMAERRR  60
RKKLNDRLYM LRSVVPKISK MDRASILGDA IDYLKELLQR ISDLHSELES APSSAALGGP  120
STANTFLPST PTLQPFPGRI KEERCPPAPF PSPSGQQATV EVRMREGQAV NIHMFCARRP  180
GILLSTMRAL DSLGLDIEQA VISCFDGFAM DVFRAEQCRE GPGLLPEEIK AVLLHCAGLQ  240
NAM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14462KKKGMPAKNLMAERRRRKK
25663ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1515360.0DQ151536.1 Hordeum vulgare subsp. vulgare inducer of CBF expression 2 (ICE2) mRNA, partial cds.
GenBankAK3551180.0AK355118.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1016C20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651003.11e-122PREDICTED: transcription factor ICE1
SwissprotQ9LPW38e-96SCRM2_ARATH; Transcription factor SCREAM2
SwissprotQ9LSE28e-96ICE1_ARATH; Transcription factor ICE1
TrEMBLM0WAF51e-179M0WAF5_HORVD; Uncharacterized protein
STRINGMLOC_46407.11e-178(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.43e-91bHLH family protein