PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_45114.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 148aa    MW: 16257.5 Da    PI: 9.7585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_45114.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-1189124139
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-ST CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKls 39 
                   +r++h ++Er+RR+++N+ ++ Lr+l+P++   +s+++s
  MLOC_45114.3  89 QRMTHIAIERNRRRQMNEYLAVLRSLMPES---YSRRVS 124
                   79***************************9...888866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.91E-1079127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-987121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-887122No hitNo description
PROSITE profilePS5088810.91888148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-989124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MTLDALCAAT DVLVYDTFNA AAAASAAPAE DTLLFGDAAG SAWMAGSAPA AAAQAVPAVP  60
VEEGEKAQGR RKRRRRARSC KNREEAESQR MTHIAIERNR RRQMNEYLAV LRSLMPESYS  120
RRVSTHAHIV APRRIPDTFS TPCVEFLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16975RRKRRRR
27074RKRRR
37077RKRRRRAR
489100RMTHIAIERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_45114.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629811e-56AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence.
GenBankAP0149601e-56AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-56CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552351e-56CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174319.11e-39transcription factor bHLH94-like
TrEMBLA0A287JBR91e-46A0A287JBR9_HORVV; Uncharacterized protein
STRINGMLOC_45114.11e-79(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.18e-16bHLH family protein