PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38567.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 242aa    MW: 24044.9 Da    PI: 10.1725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38567.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.3e-1284129555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  MLOC_38567.1  84 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 129
                   99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1777139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-1377133No hitNo description
PROSITE profilePS5088817.28279128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1681138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-984129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1385134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDGGFKSPNG TGGDHALFNG FGVHGGAAAV QPTFGQGGSM SGQSFGGGPA ASGGTTAPAS  60
SGGGAAPPRQ TRVRARRGQA TDPHSIAERL RRERIAERMK SLQELVPNAN KTDKASMLDE  120
IIDYVKFLQL QVKVLSMSRL GGAAGMAPLV ASMSSEANSS AKSSNGGGNS AAAAAAKANG  180
GGESGGGGGG GGLRVTEQQV AKMMEEDMGT AMQYLQGKGL CLMPISLASA ISSATTTTTS  240
PP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_38567.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057844e-48AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10.
GenBankAP0149654e-48AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126174e-48CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560994.11e-122transcription factor bHLH82
SwissprotQ9ZUG95e-79BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A287VWH71e-169A0A287VWH7_HORVV; Uncharacterized protein
STRINGMLOC_38567.11e-171(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-46LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]