PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_38425.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 85aa    MW: 9633.89 Da    PI: 7.3653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_38425.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.1e-0712521554
                  HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
           HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                  +iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  MLOC_38425.1 12 EINELISKLQALLPESSrRRSASRSSASKLLKETCGYIKSL 52
                  7**************6647777779999************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.743152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-91171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-91176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-51252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSSRRGRITD EEINELISKL QALLPESSRR RSASRSSASK LLKETCGYIK SLHQEVDDLS  60
DRLSELMSTL DETSPQAEII RSLLR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601311e-142AK360131.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917019.12e-40PREDICTED: transcription factor ILI5-like
SwissprotQ10R471e-35ILI3_ORYSJ; Transcription factor ILI3
SwissprotA2XD151e-35ILI3_ORYSI; Transcription factor ILI3
TrEMBLF2D8B92e-52F2D8B9_HORVD; Predicted protein
STRINGBGIOSGA031957-PA1e-38(Oryza sativa Indica Group)
STRINGLOC_Os10g26410.11e-38(Oryza sativa Japonica Group)
STRINGORGLA10G0079400.11e-38(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-24bHLH family protein