PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37477.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 107aa    MW: 12028.5 Da    PI: 7.5139
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37477.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.2e-063784152
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
           HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52
                  ++  + erE+  Rd++N+ f eL ++l ++     +   Ka++L  A + ++
  MLOC_37477.1 37 KKNHKAEREKLKRDQLNDLFVELSSMLDHD----RQNSGKATVLGDAARVLR 84
                  5677899********************997....344556666666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.6E-934104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1134103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.4293686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-43785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00394292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MVADAESSDS MAGSSRSAAE KHVDRCLDKR AQEKAPKKNH KAEREKLKRD QLNDLFVELS  60
SMLDHDRQNS GKATVLGDAA RVLRDLITQV ESLRKEQSTL LTECQYV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37477.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191318.12e-66transcription factor bHLH47-like
RefseqXP_020191373.12e-66transcription factor bHLH47-like
RefseqXP_020191427.12e-66transcription factor bHLH47-like
SwissprotQ69V101e-27BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A453HXV56e-65A0A453HXV5_AEGTS; Uncharacterized protein
TrEMBLA0A453HXV85e-66A0A453HXV8_AEGTS; Uncharacterized protein
STRINGMLOC_37477.18e-72(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129592124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-23bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]