PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36351.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 245aa    MW: 26873.4 Da    PI: 7.2664
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36351.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-1470121155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+ +hn+ Er RR+++N+ ++ Lr+llP +   +++Kls   ++ ++ +YI +Lq
  MLOC_36351.2  70 RKISHNAYERDRRKQLNELYSDLRSLLPDS---DHTKLSIPITVSRVLKYIPELQ 121
                   6889**************************...9******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-1668137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.54869120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-1069124No hitNo description
PfamPF000105.5E-1170121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1270136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-975126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGHQTQMFDD PFASSMSSLD ADIFSVAGGL HPSQWPGLDH DVSLAPAANN GTSSGGYGSP  60
GGGDGSGSHR KISHNAYERD RRKQLNELYS DLRSLLPDSD HTKLSIPITV SRVLKYIPEL  120
QKQVDGLEKK KEELTRASCK PGVLTMKENT VPIVSATCLD EREIMVQVSL VSTMAGALPM  180
SKCIKVLENE GLRLISSSTS AFQNRTFYSL HLQRTQRTMS KECPAFCEEL ENALTQKAGL  240
RLHHQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2517460.0AK251746.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf134m16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565095.11e-113PREDICTED: transcription factor bHLH100-like
SwissprotQ9M1K12e-28ORG2_ARATH; Transcription factor ORG2
TrEMBLM0VQ630.0M0VQ63_HORVD; Uncharacterized protein
STRINGMLOC_36351.11e-165(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.17e-30bHLH family protein