PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36345.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 166aa    MW: 19282.2 Da    PI: 9.5046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36345.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH551.4e-172370555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  hn  ErrRRd+iN+++  L+ellP++   ++   +K+++L +A++Y+ksLq
  MLOC_36345.4 23 HNFSERRRRDKINEKLKALQELLPNC---TKVHTDKVSMLDEAIDYLKSLQ 70
                  99************************...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-211687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.4791869IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-162374No hitNo description
Gene3DG3DSA:4.10.280.108.1E-202378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-152370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-172475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEDGRALRRM SIPTRRSRSA DFHNFSERRR RDKINEKLKA LQELLPNCTK VHTDKVSMLD  60
EAIDYLKSLQ LQLQMLVMGK GMAPVVPPEL QQYMHYITTD PAAQLMQIPP SEPPRPFQIT  120
HANPPQQESD FLSQMQNHLH PSDQPQINFL RPPKLQLYTP FSTMHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERRRRD
22732RRRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2505720.0AK250572.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86m18, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240432.13e-82PREDICTED: transcription factor PIF1-like isoform X2
SwissprotO805363e-28PIF3_ARATH; Transcription factor PIF3
TrEMBLM0VQ541e-120M0VQ54_HORVD; Uncharacterized protein
STRINGMLOC_36345.31e-115(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-29phytochrome interacting factor 3