PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_34429.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 79aa    MW: 8786.16 Da    PI: 5.0522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_34429.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.79e-081381355
                  HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  R++i +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  MLOC_34429.1  1 REKISERLRTLQELVPNG-----TKVDMVTMLEKAIGYVKFLQ 38
                  89**************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000104.3E-5138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-11145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-9142No hitNo description
SuperFamilySSF474595.89E-12149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0028143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.065137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
REKISERLRT LQELVPNGTK VDMVTMLEKA IGYVKFLQLQ VKVLATDEFW PAQGGKAPEI  60
SDVKEALDAI LSSQTGQLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096626e-72AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756070.11e-44PREDICTED: transcription factor APG-like
SwissprotQ9FJ001e-40BH086_ARATH; Putative transcription factor bHLH086
TrEMBLM0VMD41e-51M0VMD4_HORVD; Uncharacterized protein
STRINGMLOC_34429.13e-51(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.18e-42RHD SIX-LIKE 1