PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_31327.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 318aa    MW: 34128.6 Da    PI: 5.5167
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_31327.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS237.55.9e-73953092217
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfsh 95 
                   v +L++cAea++  ++ +a+ +Larl e+asp+g +p++R+aayf+eALa r a++++++++  pp+e ++     ++ + al++++ v+Pi++f h
  MLOC_31327.1  95 VGALTACAEALAGCQHDAANYYLARLGETASPSGpTPLHRVAAYFAEALALRAANMWPHVFDVTPPRELTDGAfhDDDDALALRVLNSVTPIPRFLH 191
                   678******************************************************************988887888999999************* PP

          GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                   +t N+ + +a++g++rvHiiDfdi+qGlQWp+Llq+La+R+ e+p+++RiTgvgs    s++el+ tg rLa++A+ lg+ fef++ v++rled++l
  MLOC_31327.1 192 FTLNERLIRAFDGHDRVHIIDFDIKQGLQWPSLLQSLAARRpEPPAHVRITGVGS----SRQELQDTGARLAHVAAGLGLAFEFHA-VVDRLEDVRL 283
                   **************************************66548888*********....9**************************.7********* PP

          GRAS 192 eeLrvkpgEalaVnlvlqlhrlldes 217
                   ++L+vk+gE +aVn++l+ hrll+++
  MLOC_31327.1 284 WMLHVKRGERVAVNCILAAHRLLRDE 309
                   **********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.68768318IPR005202Transcription factor GRAS
PfamPF035142.0E-7095309IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMQVAAGEGG EEEVAEEERK VFLVPSAAAF PHGMVAAAGP SSLAAAKQEE YSKSPSHSSS  60
SSGTDGGSSA MLPLDPAGVR SFVVPEAERE ALELVGALTA CAEALAGCQH DAANYYLARL  120
GETASPSGPT PLHRVAAYFA EALALRAANM WPHVFDVTPP RELTDGAFHD DDDALALRVL  180
NSVTPIPRFL HFTLNERLIR AFDGHDRVHI IDFDIKQGLQ WPSLLQSLAA RRPEPPAHVR  240
ITGVGSSRQE LQDTGARLAH VAAGLGLAFE FHAVVDRLED VRLWMLHVKR GERVAVNCIL  300
AAHRLLRDET GGALSDFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-23943084217GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308989.11e-145ATP synthase D chain, mitochondrial
SwissprotQ9CAN33e-90SCL28_ARATH; Scarecrow-like protein 28
TrEMBLM0VJI70.0M0VJI7_HORVD; Uncharacterized protein
STRINGMLOC_31327.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-81GRAS family protein