PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_30102.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 120aa    MW: 13592.9 Da    PI: 10.879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_30102.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-1366111655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +++Er RR +i +++ +L+el+P+      k  + +++L +Av+YIk+Lq
  MLOC_30102.3  66 SIAERVRRTKISERIRKLQELVPNM----EKQTNTSDMLDLAVDYIKELQ 111
                   689*********************6....4679****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.90760110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-1663116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-1064115No hitNo description
Gene3DG3DSA:4.10.280.107.8E-1565115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1066111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-1166116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MSGPAAKRRP REAANGRSGQ LKPQFSLPAG SKPSPEIAAI EKFLQFQDSV PCKIRAKRGC  60
ATHPRSIAER VRRTKISERI RKLQELVPNM EKQTNTSDML DLAVDYIKEL QMQVKVCIYR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_30102.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3715040.0AK371504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2135O23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177240.12e-68transcription factor bHLH130-like
SwissprotQ66GR32e-47BH130_ARATH; Transcription factor bHLH130
TrEMBLF2E5T05e-76F2E5T0_HORVV; Predicted protein
STRINGMLOC_30102.25e-79(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.19e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]