PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_23537.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 197aa    MW: 20876.5 Da    PI: 7.296
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_23537.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.29.1e-32451351089
           TCP  10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg.............k 89 
                   k h+kv+gR+ RvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++ +a ++   ++++ssss      +             +
  MLOC_23537.1  45 KGHSKVNGRGQRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTAPAAFVsssTPSTSSSSF-----SyphtllgkrpreeN 135
                   88******************************************************99999666222222222222.....122233333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136922.4724397IPR017887Transcription factor TCP subgroup
PfamPF036343.0E-2647134IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MTSHDIAAAP SPFHVYQQHL PMTVAPSPDV GLAPAPSKEA GGSVKGHSKV NGRGQRVRMP  60
IVCAARVFQL TRELGLKSDG QTIEWLLRQA EPSILAATGT GTAPAAFVSS STPSTSSSSF  120
SYPHTLLGKR PREENDAVGA AAAASAFWAA LPWQDDWGFS PLEAQATYMP MAQVHQHHLD  180
LVAAVSGAAR RAEEEIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_23537.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615685e-84AK061568.1 Oryza sativa Japonica Group cDNA clone:006-311-F05, full insert sequence.
GenBankAP0040675e-84AP004067.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1581_H09.
GenBankAP0149585e-84AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146556.13e-99transcription factor TCP7-like
SwissprotQ9FMX22e-34TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A287UBY71e-141A0A287UBY7_HORVV; Uncharacterized protein
STRINGMLOC_23537.11e-142(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.16e-26TCP family protein