PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_23044.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 161aa    MW: 17764.6 Da    PI: 4.6308
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_23044.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18148556
           AP2  5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                  GVr+++ +g+WvAeIr p++   r+r +lg+f+ aeeAa a++aa+ +l+ge
  MLOC_23044.1  1 GVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDAAEEAALAYDAAAFRLRGE 48
                  9***99.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-33161IPR001471AP2/ERF domain
CDDcd000181.89E-18157No hitNo description
Gene3DG3DSA:3.30.730.104.7E-30156IPR001471AP2/ERF domain
PROSITE profilePS5103222.155155IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-21156IPR016177DNA-binding domain
PfamPF008471.1E-12148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
GVRQRHWGKW VAEIRLPRNR TRLWLGTFDA AEEAALAYDA AAFRLRGESA RLNFPELRRG  60
GQHHGPPLDA AIDAKLHSIC HGEDPPQSQS NATPTPTSFP DVKSEPVCSV SESSSSADGE  120
VSSCSDDVPE MQLLDFSEAP WDEHLLSKYP SLEIDWDAIL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-18155863ATERF1
2gcc_A1e-18155863ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3701700.0AK370170.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2106C01.
GenBankAK3588230.0AK358823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1083M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141968.13e-79putative AP2/EREBP transcription factor superfamily protein
SwissprotO656651e-47ERF60_ARATH; Ethylene-responsive transcription factor ERF060
SwissprotQ8H1E43e-47RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLF2E1Z91e-115F2E1Z9_HORVD; Predicted protein
TrEMBLM0VD291e-116M0VD29_HORVD; Uncharacterized protein
STRINGMLOC_23044.11e-115(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-30related to AP2 4