PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_20318.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 211aa    MW: 22371.9 Da    PI: 8.2737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_20318.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.63.4e-06180207635
                   HHHHHHHHHHHHHHHHHHHCTSCC.C...TT CS
           HLH   6 nerErrRRdriNsafeeLrellPk.askaps 35 
                   +++Er RR ri +++ +L++l+P+ +   + 
  MLOC_20318.3 180 SIAERERRTRISKRLRRLQDLVPNmD---KV 207
                   689********************966...43 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.556174211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-6177210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.66E-5178209No hitNo description
Gene3DG3DSA:4.10.280.105.2E-5179209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MADPHGNGGG MGGARGGGMG GGYAHSHSHS QGGAGGNADA MAAAQQRRLS SQWSFSRQQD  60
MMPHIAEMGM AMPTPTPMPP ADVGESIATG HGSGDLSRSF SMSSWDDTNS NIIFSAPPGG  120
KKAKVMADGD DGMVTSFSNI DSQFGSSLDM PGMDDYLQLQ QDSVACRVRA KRGCATHPRS  180
IAERERRTRI SKRLRRLQDL VPNMDKVTKS E
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_20318.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690830.0AK369083.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085A02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198304.11e-110transcription factor bHLH128-like
TrEMBLA0A287M6C01e-148A0A287M6C0_HORVV; Uncharacterized protein
TrEMBLM0V8J61e-149M0V8J6_HORVV; Uncharacterized protein
STRINGMLOC_20318.11e-150(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.19e-22bHLH family protein