PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_19109.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 296aa    MW: 32771.4 Da    PI: 5.9497
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_19109.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.61.9e-1944122279
      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstc 79 
                   Wt  e+++Liea+++++e+   + l  ++W++v +++++ g++rs++qC+++w+nl ++ykk+++ e  ++ +e+ s +
  MLOC_19109.1  44 WTLPETMLLIEAKKRVHEDRHPADLGLARWRWVEDYCWRAGCQRSQNQCNDRWDNLMRDYKKVRAYEHTGAgPEAPSYW 122
                   *****************************************************************99988424444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.95636100IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.1E-638102IPR009057Homeodomain-like
SuperFamilySSF466897.18E-739102IPR009057Homeodomain-like
PfamPF138373.7E-1442125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDTKGSGFQG GGEEETGSIM PSNANANANA GAMTVAREYR RGNWTLPETM LLIEAKKRVH  60
EDRHPADLGL ARWRWVEDYC WRAGCQRSQN QCNDRWDNLM RDYKKVRAYE HTGAGPEAPS  120
YWAMARAERK ARYLPSNLLR EIYEAMGEIV ERRMGIYGAG GTFLGAPPPP TVGTGLVSVP  180
MQASPLAQVL PRPLDQETRC SSESPERKRL RPSLDGQPGS STPASAAGNN DRHHQAPESD  240
DRESSDDIEE HDELSGAIGQ CAAILSGALE SREAAEERRH REVMAVEERR SVARQA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9621062e-93EU962106.1 Zea mays clone 240234 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229516.11e-118PREDICTED: trihelix transcription factor ASR3-like
TrEMBLM0V6720.0M0V672_HORVD; Uncharacterized protein
STRINGMLOC_19109.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.12e-44Trihelix family protein