PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18783.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 282aa    MW: 30031.5 Da    PI: 8.3065
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18783.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-183181155
           AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  +++ GVr+++ +grWvAeI+d       +  r++lg+f tae+Aa+a+++a+  l+g
  MLOC_18783.1 31 CKFVGVRQRP-SGRWVAEIKDtT-----HkIRVWLGTFETAEDAARAYDEAACLLRG 81
                  799*******.7*********33.....35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.29E-303188No hitNo description
PfamPF008474.0E-133181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-283290IPR001471AP2/ERF domain
PROSITE profilePS5103219.773289IPR001471AP2/ERF domain
SMARTSM003801.0E-353295IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-193289IPR016177DNA-binding domain
PRINTSPR003677.9E-83344IPR001471AP2/ERF domain
PRINTSPR003677.9E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MELQFQQQQQ QQCQYEAAVG KAAAKGRGSK CKFVGVRQRP SGRWVAEIKD TTHKIRVWLG  60
TFETAEDAAR AYDEAACLLR GSNTRTNFAT AAPSAAASSP PDSPLASRIR TLLTHKKLKK  120
SASPPPRASS HSQPPALAIG PATAASNASA GSTSSTISFA MSAGGAAAAH HTPTPLSNHM  180
TYQQWINNGG EHLHQHLEHH PWPATLSAAV PTLAARRNVG DCRVITDGTR PEKQQEDSAS  240
PGAAMSGVVQ EQDDGFDIGS DPCDSLWDLP PICQLSCRSL MY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-133388359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3684490.0AK368449.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2073N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228242.11e-81PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLM0V5L60.0M0V5L6_HORVD; Uncharacterized protein
STRINGMLOC_18783.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-23related to AP2 11