PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18529.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 279aa    MW: 30721.2 Da    PI: 4.5591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18529.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-183483255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  +++G+r+++ +g+W+AeIrdp++     r++lg++ +aeeAa+a++  +++++g
  MLOC_18529.1 34 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNSAEEAARAYDVEARRIRG 83
                  69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.9073491IPR001471AP2/ERF domain
CDDcd000181.19E-313492No hitNo description
Gene3DG3DSA:3.30.730.101.5E-303493IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-213492IPR016177DNA-binding domain
SMARTSM003801.1E-353497IPR001471AP2/ERF domain
PRINTSPR003672.4E-103546IPR001471AP2/ERF domain
PfamPF008475.5E-113583IPR001471AP2/ERF domain
PRINTSPR003672.4E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
PARRSGFSGD GLKATAAGEY DCASGSAKRK RKNQFRGIRR RPWGKWAAEI RDPRKGVRVW  60
LGTYNSAEEA ARAYDVEARR IRGKKAKVNF PEEAPMASQQ RCPEPTAVKV PEFNTEQKPV  120
LNTMGNADVY SCAAVDYTLN QQFVQPQNMS FVPTMNAVEA PFMNFSSDQG SNSFSCSDFS  180
WENDIKTPDI TSVLASIPTS TEVNESAFVQ NNGSNSTAPP VMGNANVDLA DLEPYMKFLM  240
DDGSDESIDS ILSCDVPQDV VGNMDLWTFD DMPLSAGFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-193491260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12741KRKRKNQFRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3644310.0AK364431.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2025B04.
GenBankAK3570640.0AK357064.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1045F21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564157.11e-160PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-110ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLM0V5870.0M0V587_HORVD; Uncharacterized protein
STRINGMLOC_18529.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.39e-36related to AP2 2