PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_17459.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 98aa    MW: 10900.4 Da    PI: 9.5232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_17459.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-071458445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     WT+   +l+ +a + +  +   +W+ +ar +g g+++ ++k ++ 
     MLOC_17459.1 14 WTPKQNKLFEQALAVHDRDtpdRWHNVARAVGSGKSADDVKRYYE 58
                     *****************99************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.4E-71063IPR001005SANT/Myb domain
SuperFamilySSF466892.85E-111368IPR009057Homeodomain-like
CDDcd001671.01E-51461No hitNo description
PfamPF002491.3E-51458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASLSMSTAG RAGWTPKQNK LFEQALAVHD RDTPDRWHNV ARAVGSGKSA DDVKRYYELL  60
VHDITNIEAG KVPFPAYRPP CPGPNVGYEA DRLKHLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-2814981192RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544121e-165AK354412.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007C15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961116.15e-46PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB81e-30RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLF2CS102e-69F2CS10_HORVD; Predicted protein
STRINGMLOC_17459.17e-69(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.19e-32RAD-like 1