PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_16609.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 146aa    MW: 16111.1 Da    PI: 9.2089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_16609.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.5e-06115141430
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
           HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                   +h+  Er RR+ri +++  L++l+P +
  MLOC_16609.5 115 SHSLSERVRRERISERMRMLQSLVPGC 141
                   799**********************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.74E-4109143No hitNo description
SuperFamilySSF474594.71E-8109143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.344111146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-7114141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MAGFSHLPQQ MEYGLTNAGS FLLCHGNPED AAAAASREGS SVVLDTPLVA TASMEKKRKP  60
KEDTTASLNS AHSKETKEST RKRGGKKQDK ETAEEEEEPK GYIHVRARRG QATDSHSLSE  120
RVRRERISER MRMLQSLVPG CDKVIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3654680.0AK365468.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166246.16e-85transcription factor bHLH137-like
SwissprotQ93W884e-26BH137_ARATH; Transcription factor bHLH137
TrEMBLM0V1001e-105M0V100_HORVD; Uncharacterized protein
STRINGMLOC_16609.21e-102(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-13bHLH family protein
Publications ? help Back to Top
  1. Kaneko T, et al.
    Structural analysis of Arabidopsis thaliana chromosome 5. IX. Sequence features of the regions of 1,011,550 bp covered by seventeen P1 and TAC clones.
    DNA Res., 1999. 6(3): p. 183-95
    [PMID:10470850]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]