PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_13305.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 263aa    MW: 28730.5 Da    PI: 9.4532
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_13305.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-194693455
           AP2  4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  +G+r+++ +g+W+AeIrdp     + +r++lg+f+ta++Aa+a++ a+++l+g
  MLOC_13305.4 46 HGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFDTADDAARAYDVAARRLRG 93
                  7******.**********72....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-3344107IPR001471AP2/ERF domain
PROSITE profilePS5103222.98544101IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2145102IPR016177DNA-binding domain
PRINTSPR003678.3E-104556IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3146102IPR001471AP2/ERF domain
PfamPF008474.2E-124693IPR001471AP2/ERF domain
CDDcd000185.83E-2947103No hitNo description
PRINTSPR003678.3E-106783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKRTRFTAVG SWYHGRGRLM RFLFAAYDGG RAAHAASRKK RTGHLHGIRQ RPWGKWAAEI  60
RDPHKGTRVW LGTFDTADDA ARAYDVAARR LRGSKAKVNF PDAARTGARP RRASRRTAQK  120
PQCPPARTTA YSATAAARAQ PEQDAMMVKP ELMEFFNVDA IVHLTTAVAA LPPVTASTFA  180
DTMPRVDEDS SVGSGGGAML GFADELGFDP FMMFQLPCSD MYESADSIFA GDAVIPDALS  240
VDSGMDAVSL WSFDEFPMDS AIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2244107569ATERF1
3gcc_A6e-2244107569ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1023840.0DQ102384.2 Hordeum vulgare root abundant factor (RAF) gene, promoter region and complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561984.21e-67PREDICTED: uncharacterized protein LOC100826410
RefseqXP_004985469.17e-68PREDICTED: ethylene-responsive transcription factor RAP2-3-like
RefseqXP_004985470.17e-68PREDICTED: ethylene-responsive transcription factor RAP2-3-like
RefseqXP_004985471.17e-68PREDICTED: ethylene-responsive transcription factor RAP2-3-like
TrEMBLM0UR090.0M0UR09_HORVD; Uncharacterized protein
STRINGMLOC_13305.11e-171(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.26e-19related to AP2 12