PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_13305.1
Common NameRAF
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 328aa    MW: 35039.1 Da    PI: 5.8765
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_13305.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18111158455
           AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   +G+r+++ +g+W+AeIrdp     + +r++lg+f+ta++Aa+a++ a+++l+g
  MLOC_13305.1 111 HGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFDTADDAARAYDVAARRLRG 158
                   7******.**********72....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-33109172IPR001471AP2/ERF domain
PROSITE profilePS5103222.985109166IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-21110167IPR016177DNA-binding domain
PRINTSPR003671.2E-9110121IPR001471AP2/ERF domain
PfamPF008476.5E-12111158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-31111167IPR001471AP2/ERF domain
CDDcd000181.88E-29112168No hitNo description
PRINTSPR003671.2E-9132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MCGGAILAQL IPPSAGRPSK QAAAGGRAPP TSSKKGGVSK SRHSSTPDAD DDVFEAAFED  60
FDDHFDLRAE EDGGDDHVVF ASKPAFSPRP AYDGGRAAHA ASRKKRTGHL HGIRQRPWGK  120
WAAEIRDPHK GTRVWLGTFD TADDAARAYD VAARRLRGSK AKVNFPDAAR TGARPRRASR  180
RTAQKPQCPP ARTTAYSATA AARAQPEQDA MMVKPELMEF FNVDAIVHLT TAVAALPPVT  240
ASTFADTMPR VDEDSSVGSG GGAMLGFADE LGFDPFMMFQ LPCSDMYESA DSIFAGDAVI  300
PDALSVDSGM DAVSLWSFDE FPMDSAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21109172569ATERF1
3gcc_A1e-21109172569ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1023830.0DQ102383.2 Hordeum vulgare root abundant factor (RAF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561984.21e-88PREDICTED: uncharacterized protein LOC100826410
TrEMBLM0UR070.0M0UR07_HORVD; Uncharacterized protein
TrEMBLQ4F8A40.0Q4F8A4_HORVU; Root abundant factor
STRINGMLOC_13305.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-19related to AP2 2
Publications ? help Back to Top
  1. Jung J, et al.
    The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis.
    Planta, 2007. 225(3): p. 575-88
    [PMID:16937017]