PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12824.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GeBP
Protein Properties Length: 520aa    MW: 56232.9 Da    PI: 5.4676
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12824.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57334.84.4e-11173259597
        DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                   r w+ eDe+ +L +l+   + +g+       +++  v +s++ k  +k+++ eK+r LK +++k v++   g     +k++d   f+ls+++Wg
  MLOC_12824.1 173 RRWTAEDELKILEALVHHVKANGTR--PGAGELIAAVGGSLERKnCTKTEIYEKVRTLKLRYEKAVST---G--ALPEKDDDLRKFKLSEQVWG 259
                   67****************9999966..67899*********875389*******************99...3..44567889999********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-15173259IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGRKRREPSP PPPPPPEEES SSEESSSAEE EEEEGAAEAT PTTQNPPSPS SAATADDADA  60
DSSDGSDEES SESGKIDAEA FELRQIASSN PPAAAASELE SDDHEPSPQG KGKKRAKAGA  120
DPSPSGKAKK AKAGAAEKAP SVLTPSSEGK KKRKAQPEKT TPWSKPEKPG HLRRWTAEDE  180
LKILEALVHH VKANGTRPGA GELIAAVGGS LERKNCTKTE IYEKVRTLKL RYEKAVSTGA  240
LPEKDDDLRK FKLSEQVWGE NAKQVAAATM AQNEAASSKS KKKGQTSKEK TEGYSKGGTV  300
KEDTTIAVDE NVGTSTELNK GQATEEKVDE DSKGRSSKKA RTADTPAKSR KRVNHKEELE  360
GDAKTGTAKE TVDTTAQNGG TSVRSKSGKS DKEKADEDAE SPTLKEDMAD TQNAVTLDLF  420
KKEGETHDEK MDTDANVKGT RKGFDELQKL YPNLTSFVEE IQAQHPCGET LKRVFEFIND  480
EKASALESKI KKQRVSELRM EMRRADTKKE VTNIFIGLLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117GKKRAKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3635530.0AK363553.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016K12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571636.11e-114PREDICTED: hepatoma-derived growth factor-related protein 2-like
TrEMBLF2DI350.0F2DI35_HORVD; Predicted protein
STRINGMLOC_12824.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737