PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12223.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 193aa    MW: 21303.7 Da    PI: 5.1065
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12223.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-183989155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  + ++GVr++  +grWvAeIr+p   + r +r++lg+f ta +Aa+ ++aa+++l+g
  MLOC_12223.1 39 CPFRGVRQRT-WGRWVAEIREP---N-RgARIWLGTFATALDAARTYDAAARALYG 89
                  679****999.**********8...3.35***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.6E-3040103IPR001471AP2/ERF domain
PROSITE profilePS5103220.314097IPR001471AP2/ERF domain
PRINTSPR003678.7E-94152IPR001471AP2/ERF domain
PfamPF008477.2E-124189IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-194197IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-274197IPR001471AP2/ERF domain
CDDcd000184.07E-274199No hitNo description
PRINTSPR003678.7E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEEVPAPVTE EQNKRRCCPL RRSRKGCMKG KGGPENQRCP FRGVRQRTWG RWVAEIREPN  60
RGARIWLGTF ATALDAARTY DAAARALYGD CARLNLATAP LPSMTAEVPL LHEQAQQPST  120
HGTNTNNTNV PCCSSSNSTP SLTTRTNSST LDSELSNYNM AGTSELEDFD EYVAGLPKPE  180
DYGLDGFEEV MDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-144196662ATERF1
3gcc_A8e-144196662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.15e-63PREDICTED: dehydration-responsive element-binding protein 2C
SwissprotQ84ZA16e-65DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLM0UMA21e-143M0UMA2_HORVD; Uncharacterized protein
STRINGMLOC_12223.11e-143(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.17e-30ERF family protein