PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12058.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 191aa    MW: 20688.2 Da    PI: 8.3485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12058.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12127172655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +++Er RR ri +++ +L++l+P+     +k  s +++L +Ave+I+ Lq
  MLOC_12058.2 127 SIAERERRTRISEKLRKLQDLVPNM----DKQTSTSDMLDLAVEHIRGLQ 172
                   689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.31121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-16124184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.26E-13125176No hitNo description
Gene3DG3DSA:4.10.280.105.7E-15126184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-10127172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-13127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKSQLSFTSG GPQTAAHLSR ISEGASLFPG ADVVRAAAHS GGEHPVSRSF SASGSSGGFS  60
IVGPWDESRE IIGTLDLGGY ESQFSGMASS SSLELAGMDK YMQAQQQQDQ VGFKVRAKRG  120
CATHPRSIAE RERRTRISEK LRKLQDLVPN MDKQTSTSDM LDLAVEHIRG LQSQLQVMKH  180
EQDKCTCCSK P
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12058.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2499540.0AK249954.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51f14, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165844.11e-110transcription factor bHLH128-like
SwissprotQ8H1028e-45BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A287U8F11e-138A0A287U8F1_HORVV; Uncharacterized protein
STRINGMLOC_12058.31e-123(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.16e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]