PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11838.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family LBD
Protein Properties Length: 237aa    MW: 24498.8 Da    PI: 8.2176
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11838.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.25.9e-2917118197
        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                   +C++C+vlr++C++ C+l+p++     +++q +++ +++k+FG++ ++++l+a+pe++r+++++sl+yeA  r+ +Pv Gavg++++++++l+++++
  MLOC_11838.2  17 SCNGCRVLRKGCNDACMLRPCLlwiegADAQGHATIFAAKFFGRAGLMSFLTAVPESQRPAVFQSLLYEAAGRTINPVGGAVGLLWAGSWHLCEAAV 113
                   6*********************9999877889***************************************************************99 PP

        DUF260  93 elall 97 
                   +++l+
  MLOC_11838.2 114 QTVLR 118
                   98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576118No hitNo description
PROSITE profilePS5089118.17316122IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-2517116IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRGSERAAVS TSTSGMSCNG CRVLRKGCND ACMLRPCLLW IEGADAQGHA TIFAAKFFGR  60
AGLMSFLTAV PESQRPAVFQ SLLYEAAGRT INPVGGAVGL LWAGSWHLCE AAVQTVLRGG  120
AIRPLPELAG GVPEGGVGGS DLFASSSRRA VVGCSTYSMA KRVTPRKTWA PEAASHHQEP  180
SCDLGLFLTP GSAAAAEGER RARRAGTPSM SSDGSVTTTA GAGADGDKEP ELLNLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11838.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638590.0AK363859.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019I02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191646.11e-142LOB domain-containing protein 37-like
SwissprotQ9FN116e-66LBD37_ARATH; LOB domain-containing protein 37
TrEMBLF2DIZ11e-170F2DIZ1_HORVV; Predicted protein
STRINGTraes_2BS_5DF7F4FEE.11e-142(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.19e-64LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]