PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10783.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family LBD
Protein Properties Length: 184aa    MW: 19265.4 Da    PI: 6.7713
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10783.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.31.2e-38121121100
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                   +C aCk+lrr+Ca++Cv+apyf+ae+ +++fa++hk+FGasn  kll+++ + +r++a+++++yeA+ar+rdPvyG+v++i++lqqq++ l+a++a+
  MLOC_10783.1  12 PCGACKFLRRRCAAECVFAPYFCAEDgASQFAAIHKVFGASNAAKLLQQVAPGDRSEAAATVTYEAQARLRDPVYGCVAHIFALQQQVAALQAQVAH 108
                   7***********************9989********************************************************************9 PP

        DUF260  97 lkee 100
                   ++++
  MLOC_10783.1 109 ARTQ 112
                   9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.75311113IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3712110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAGAGVTTTG SPCGACKFLR RRCAAECVFA PYFCAEDGAS QFAAIHKVFG ASNAAKLLQQ  60
VAPGDRSEAA ATVTYEAQAR LRDPVYGCVA HIFALQQQVA ALQAQVAHAR TQAQLGAAAT  120
AMHPLLQQQA WQQAAAAEHD HHSITSTQSS SGCYSGAHQR SDGSSLHGAE MYACGYGEQE  180
EGSY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0090570.0BT009057.1 Triticum aestivum clone wdr1f.pk002.l10:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649405.18e-79PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB79e-52LBD16_ARATH; LOB domain-containing protein 16
TrEMBLM0UGQ21e-131M0UGQ2_HORVD; Uncharacterized protein
STRINGMLOC_10783.11e-130(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102623344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-43lateral organ boundaries-domain 16