PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10638.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GeBP
Protein Properties Length: 348aa    MW: 38205.8 Da    PI: 5.3342
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10638.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.97.2e-3467166297
        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskk 94 
                   lfqrlw+eeDeiv+L+++ +f+a++g+   +++ d++ fye +++++++++sksql eK+rrLK+K++++v++ + sg+ +sf+++h+q +fe+++ 
  MLOC_10638.1  67 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTEPFYEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVERlRCSGNTFSFRSPHEQAVFEIARN 163
                   79*************************9977778***************************************8889******************** PP

        DUF573  95 iWg 97 
                   iW+
  MLOC_10638.1 164 IWR 166
                   **8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-3068165IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MLPMVDDHSA AGAAASSSFP DADAYGNGDS EDIDFPVDPI PNPPFSSSAS VVAPASASAT  60
VGERRPLFQR LWTEEDEIVI LRAFAEFTAQ RGTAFASHQY DTEPFYEEMR RRLQLDFSKS  120
QLAEKLRRLK RKYRNCVERL RCSGNTFSFR SPHEQAVFEI ARNIWRPSSD KHGRDPSAAD  180
SEDDATITAT NAAANGDAKS PSSSRAHRRG RRRRTADLAA DASEAPPPYK PGSMPVKTED  240
SLPAFFPQVS MDGAEPVVAP VVNTESSFLT PLFKEMVRAM LGIGGCPSPL GLGAKVPEQP  300
SAVLGIPMEG EKWRQQRILE LEVYLRRIDL LQDEVKSALE ELKSAPPT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10638.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509220.0AK250922.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98d18, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169680.10.0probable transcription factor At3g04930
RefseqXP_020169681.10.0probable transcription factor At3g04930
TrEMBLM0UG340.0M0UG34_HORVV; Uncharacterized protein
STRINGMLOC_10638.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.28e-34DNA-binding storekeeper protein-related transcriptional regulator