PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10364.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 360aa    MW: 38799.1 Da    PI: 8.5729
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10364.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17178211134
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                   Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  MLOC_10364.1 178 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 211
                   *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.19E-12171212No hitNo description
SMARTSM004011.6E-15172224IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.6E-14176211IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.453176208IPR000679Zinc finger, GATA-type
CDDcd002021.95E-14177214No hitNo description
PfamPF003202.7E-15178211IPR000679Zinc finger, GATA-type
PROSITE patternPS003440178203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSTIYMSQLS TAFPLMEEDH HHQDHHQGHF QAFTLPKDPP ILFPFVISNS SPSENSSTLS  60
YGSDQHLMQH HVMLDQPQHM IGGSSSVFST PFPTVESIRD DMIERSYSYD PYDMEKLQAT  120
SGSLKIGKWT APAPAAKMRI TRKTSDPGVK KPRKRAQAYE DHGHMGGMNQ ALGVIRTCSD  180
CNTTKTPLWR SGPCGPKSLC NACGIRQRKA RRAMMATGAA PATDVGAAKA AAAGEAAVTV  240
HPPKVKKEKR AADVDRSLPF KKRCKVVQDH TATNSAASTT VEAAAEPPIV VTTTTTTTDA  300
APARDLVDTI GANWSKSPTA ATASCFRPPP APFAVSVPVQ DEITDAAMLL MTLSCELVRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10364.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609010.0AK360901.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128A09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170490.10.0putative GATA transcription factor 22
SwissprotQ6YW486e-77CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLM0UF380.0M0UF38_HORVV; Uncharacterized protein
STRINGMLOC_10364.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-19GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]