PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10225.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 265aa    MW: 28054.4 Da    PI: 4.3088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10225.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-1993144156
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                   ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++ a+ +l+g+
  MLOC_10225.1  93 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDSAAIQLRGA 144
                   69********.**********88.....55*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1293143IPR001471AP2/ERF domain
CDDcd000181.91E-2893153No hitNo description
Gene3DG3DSA:3.30.730.102.2E-2994152IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2294153IPR016177DNA-binding domain
PROSITE profilePS5103222.94594151IPR001471AP2/ERF domain
SMARTSM003805.0E-3694157IPR001471AP2/ERF domain
PRINTSPR003672.0E-1095106IPR001471AP2/ERF domain
PRINTSPR003672.0E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSRSRTVRIY WDDPDVTDSS SEEEDEEGCA ARRVGRMVRE LPPAPTPLVQ AAATSPEQCS  60
PGDDDLPRRV GGYTGARKRL AKGGGGGSAA QSTKFRGVRR RPWGKFAAEI RDPWRGVRVW  120
LGTFDTAEEA ARVYDSAAIQ LRGATATTNF STSTNSEGAQ EEDLTAAGYE SGAESSQAVS  180
SPTSVLRKVP SMSSLAGDRA DSDACQGEAA AGSSLSVPEE LGEFVPFEDA PVYSSSSFWD  240
FEPQSGFLYA EPSSAEASWD ASAGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2190156168ATERF1
3gcc_A3e-2190156168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644464.11e-124PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLM0UEL30.0M0UEL3_HORVD; Uncharacterized protein
STRINGMLOC_10225.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-23cytokinin response factor 1